論文專著：

發(fā)表研究論文60余篇，出版專著3部。

出版專著：

1、《基礎(chǔ)分子生物學》國家“十一五”規(guī)劃教材，參編，高等教育出版社，2007年6月。

2、《簡明分子生物學教程》參編，中國農(nóng)業(yè)出版社，2008年7月。

3、《普通遺傳學實驗》，張祖新，嚴長杰 編，高等教育出版社，2015年-6月。

發(fā)表英文論文：

1. Fu J, Cheng Y, Linghu J, Yang X, Kang L, Zhang Z, Zhang J, He C, Du X, Peng Z, Wang B, Zhai L, Dai C, Xu J, Wang W, Li X, Zheng J, Chen L, Luo L, Liu J, Qian X, Yan J, Wang J, Wang G（2013） RNA sequencing reveals the complex regulatory network in the maize kernel. Nat Commun. 4:2832 (The co-first author).

2. Li F, Jia H, Liu L, Zhang C, Liu Z, Zhang Z (2014) Quantitative trait loci mapping for kernel row number using chromosome segment substitution lines in maize. Genet Mol Res 2014,13(1):1707-1716.

3.Du H, Huang M, Zhang Z, Cheng S (2014) Genome-wide analysis of the AP2/ERF gene family in maize waterlogging stress response. Euphytica 198:115–126.

4. Zhai L, Sun W, Zhang K, Jia H, Liu L, Liu Z, Teng F, Zhang Z* (2014) Identification and characterization of Argonaute gene family and meiosis-enriched Argonaute during sporogenesis in maize. J Integr Plant Biol, doi: 10.1111/jipb.12205

5. Teng F, Zhai L,Liu R Bai W, Wang L, Huo D, Tao Y, Zheng Y, Zhang Z* (2013) ZmGA3ox2, a candidate gene for a major QTL, qPH3.1, for plant height in maize. The Plant Journal, 73:405-416.

6. Zhai L,Liu Z,Jiang Y, Zou X, Zheng Y, Zhang Z* (2013) miRNA-mediated auxin signaling regulates the initiation and elongation of crown roots of maize under submergence condition. Physiologia Plantarum,147:181-193.

7. Qi H, Huang J, Zheng Q, Huang Y, Shao R, Zhu L, Zhang Z, Qiu F, Zhou G, Zheng Y, Yue B (2013) Identification of combining ability loci for five yield-related traits in maize using a set of testcrosses with introgression lines. Theor Appl Genet.126(2):369-377.

8. Liu R, Jia H, Cao X, Huang J, Li F, Tao Y, Qiu F, Zheng Y, Zhang Z* (2012) Fine mapping and candidate gene prediction of a pleiotropic quantitative trait locus for yield-related trait in Zea mays. PLoS ONE, 7(11): e49836.

9. Liu R, Xing X, Zhang H, Zhao P, Zhang Z* (2012) Mining of Candidate Maize Genes for Nitrogen Use Efficiency by Integrating Gene Expression and QTL Data. Plant Mol Biol Report, 2:297-308.

10. LV A, Zhang H, Zhang Z*, Tao Y, Yue B, Zheng Y (2012) Coversion of the statistical combining into a genetic concept. Journal of Intergrative Agriculture, 11(1):43-52.

11. Li Q, Yang X, Xu S, Cai Y, Zhang D, Han Y, Li L, Zhang Z, Gao S, Li J, Yan J (2012) Genome-Wide Association Studies Identified Three Independent Polymorphisms Associated with α-Tocopherol Content in Maize Kernels. PLoS ONE 7(5): e36807.

12. Zhang X, Tang B, Yu F, Li L, Wang M, Xue Y, Zhang Z, Yan J, Yue B, Zheng Y, Qiu F (2012) Identification of major QTL for waterlogging tolerance using genome-wide association and linkage mapping of maize seedlings. Plant Mol Biol Report, Doi: 10.1007/s11105-012- 0526-3.

13. Zou X, Jiang Y, Zheng Y, Zhang Z* (2011) Prolyl 4-hydroxylase genes are subjected to alternative splicing in roots of maize seedlings under waterlogging. Annals of Botany, 108:1323–1335.

14. Yang X, Yan J, Gao S, Zhang Z, Li J (2011) Characterization of a global germplasm collection and its potential utilization for analysis of complex quantitative traits in maize. Mol Breeding, 28:511-526.

15. Mining of Candidate Maize Genes for Nitrogen Use Efficiency by Integrating Gene Expression and QTL Data. Plant Mol Biol Rep,2011, DOI 10.1007/s11105-011-0346-x .(通訊作者)  

16. Du H, Zhang Z*, Li JS.  Isolation and functional characterization of a waterlogging induced promoter from maize. Plant Cell Reports,2010,29:1269-1275.(通訊作者)

17. Bai W. Wang L, Teng F, Tao Y, Zhang Z* The evidence for non-additive effect as the main genetic component for maize plant height and ear height using introgression line populations. Plant Breeding, 2010, 129:376-384.(通訊作者)

18.Zou X, Jiang Y, Zhang Z, Zheng Y*  Identification of transcriptome induced in roots of maize seedlings at the late stage of waterlogging. BMC Plant Biology,2010,10:189. doi:10.1186/1471-2229-10-189.(第4)

19. Characterization of a global germplasm collection and its potential utilization for analysis of complex quantitative traits in maize. Molecular Breeding,2010,doi:10.1007/s11032-010-9500-7.(第4) 

20. Ding D, Wang H, Liu Z, Zhang Z, Zheng Y Differential expression of miRNAs in response to salt stress in maize roots. Annals of Botany, 2009; 103: 29 - 38 (第4作者)

21.Evaluation of phenotype and genetic diversity of maize landraces from Hubei Province, Southwest China. Frontiers of Agriculture in China, 2009, 3(4)：374-382.(通訊作者)

22.Wei L, Zhang D, Zhang Z* Differentially expressed miRNAs potentially involved in the regulation of defense mechanism to drought stress in maize seedlings. Int J Plant Sci, 2009, , 170 (8): 979 -989,DOI: 10.1086/605122. (通訊作者)

23.Wang L,Wei L,Zhang D,Tao Y,Zheng Y, Zhang Z* The residual background genome from a donor within an improved line selected by marker-assisted selection: impact on phenotype and combining ability. Plant Breeding, 2009, 128:429–435.(通訊作者)

24.Zhang Z*, Zhang D, Zheng Y. Transcriptional and post-transcriptional regulation of gene expression in submerged root cells of maize. Plant Signaling & Behavior, 2009,4(2):30-33.(第一作者)

25.Zhang Z, Wei L, Zou X, Tao Y, Liu Z, Zheng Y Submergence-responsive microRNA is potentially involved in the regulation of morphological and metabolic adaptations in maize root cells. Annals of Botany, 2008,102(4):509-519. (第一作者)

26. Revelation on early response and molecular mechanism of submergence tolerance in maize roots by microarray and suppression subtractive hybridization. Environ Exp Bot. 2006,58:53-63.(第一作者)

27. Fertility restoration mechanisms in CMS-S of maize (Zea mays L.) revealed through expression differences identified by cDNA microarray and suppression subtractive hybridization. Plant Mol Biol Rep,2005,23(1):17-38(第一作者)

28.Construction and characterization of normalized multiple tissues and developmental stages cDNA library of maize inbred Mo17. Mol Biol, 2005,39(2):177-184(第一作者)

29.cDNA Microarray Analysis of Early Response to Submerging Stress in Zea mays Roots. J Russ plant physiol, 2005, 52(1):43-49(第一作者)

發(fā)表中文期刊論文：

[1]趙然,蔡曼君,杜艷芳,張祖新.玉米籽粒形成的分子生物學基礎(chǔ)[J].中國農(nóng)業(yè)科學,2019,52(20):3495-3506.

[2]李云富,王靜賢,杜艷芳,鄒華文,張祖新.玉米開花期相關(guān)的Indeterminate domain(IDD)蛋白家族基因的鑒定[J].作物學報,2019,45(04):499-507.

[3]金危危,賴錦盛,張祖新,高世斌.玉米骨干自交系深度重測序及有利基因挖掘[J].科技創(chuàng)新導報,2016,13(01):169.

[4]曹征,李曼菲,孫偉,張丹,張祖新.玉米BEL1-like基因家族的鑒定、表達和調(diào)控分析[J].作物學報,2015,41(11):1632-1639.

[5]申曉蒙,劉磊,張祖新.玉米花序建成相關(guān)基因及其調(diào)控網(wǎng)絡[J].中國科學:生命科學,2014,44(08):775-783.

[6]張士龍,賀正華,張祖新,邱法展,黃益勤.聚合Cry1C*和VHb基因玉米抗蟲耐漬新種質(zhì)的創(chuàng)制[J].玉米科學,2014,22(02):46-52.

[7]齊歡歡,段利超,胡偉,黃娟,馮陽,黃亞群,祝麗英,張祖新,岳兵.利用導入系群體對玉米產(chǎn)量及產(chǎn)量相關(guān)性狀進行定位分析[J].玉米科學,2013,21(04):24-27+32.

[8]楊偉峰,王榮納,曹曉良,張祖新,陶勇生,陳景堂,鄭用璉.Mutator轉(zhuǎn)座子介導的PPR插入位點分離與遺傳分析[J].中國農(nóng)學通報,2013,29(03):180-183.

[9]曹曉良,翟立紅,劉瑞響,陶勇生,張祖新.玉米八個產(chǎn)量相關(guān)性狀的QTL鑒定[J].河北農(nóng)業(yè)大學學報,2012,35(05):1-8.

[10]劉瑞響,曹曉良,陶勇生,張祖新.不同氮素水平下玉米產(chǎn)量與zmAspAT基因表達分析[J].中國農(nóng)學通報,2012,28(24):22-26.

[11]王立秋,張祖新,滕峰,邱法展,肖海林,鄭用璉.染色體片段導入系在作物遺傳育種研究中的應用[J].植物遺傳資源學報,2012,13(01):98-104.

[12]李成璞,白葦,翟立紅,陶勇生,張祖新.玉米穗行數(shù)QTL及其互作分析[J].植物遺傳資源學報,2011,12(06):965-970.

[13]趙璞,劉瑞響,李成璞,邢向茹,曹曉良,陶勇生,張祖新.基于掖478導入系的玉米產(chǎn)量性狀QTL鑒定[J].中國農(nóng)業(yè)科學,2011,44(17):3508-3519.

[14]邢向茹,陳晨,劉瑞響,趙璞,李成璞,張祖新.低氮脅迫對玉米染色體片段導入系產(chǎn)量和苗期性狀的影響[J].安徽農(nóng)業(yè)科學,2011,39(21):12670-12672+12686.

[15]劉海軍,高慧,黃亞群,陳景堂,祝麗英,趙永峰,張祖新.玉米鋅轉(zhuǎn)運蛋白基因ZmZIP4 cDNA的克隆和表達分析[J].西北植物學報,2011,31(06):1077-1083.

[16]高慧,劉海軍,黃亞群,陳景堂,祝麗英,趙永鋒,張祖新.玉米寡肽轉(zhuǎn)運蛋白基因(ZmOPT0212)的克隆及其生物信息學分析[J].華北農(nóng)學報,2011,26(01):99-104.

[17]王婷婷,翟立紅,蘇旭,馮靜,李娟,高友軍,陶勇生,張祖新,鄭用璉.Mutator誘導的玉米白化突變體插入位點的遺傳分析及代謝途徑的構(gòu)建[J].中國農(nóng)業(yè)科學,2010,43(22):4571-4578.

[18]杜何為,黃敏,張祖新.玉米總RNA的小量快速提取[J].河北農(nóng)業(yè)科學,2009,13(09):54-55.

[19]李林,李青,王立博,張祖新,李建生,嚴建兵.玉米和水稻全基因組控制重組頻率QTL的遺傳定位分析[J].中國農(nóng)業(yè)科學,2009,42(07):2262-2270.

[20]郭晉杰,陳景堂,祝麗英,胡利宗,張祖新,黃亞群.基于玉米導入系群體的3個農(nóng)藝性狀QTL分析[J].植物遺傳資源學報,2009,10(01):27-31.

[21]杜何為,許先鳳,黃敏,趙啟桂,張祖新.硝酸銀對玉米幼胚組織培養(yǎng)的影響[J].河北農(nóng)業(yè)科學,2008(08):62-63.

[22]魏凱,許先鳳,杜何為,黃益勤,張祖新.湖北省玉米地方品種遺傳多樣性的表型評價[J].長江大學學報(自然科學版)農(nóng)學卷,2008(02):4-9+19+108-109.

[23]王磊,陳景堂,張祖新.主要禾谷類作物比較基因組學研究策略與進展[J].遺傳,2007(09):1055-1060.

[24]陶勇生,張祖新,程友林,薛亞東,鄭用璉.玉米有絲分裂染色體上玉米BAC探針的FISH雜交體系的構(gòu)建[J].中國生物化學與分子生物學報,2007(08):682-687.

[25]尤莉,邱法展,張祖新,劉瑞響.整合玉米基因表達與遺傳分析資料發(fā)掘耐漬性候選基因[J].河北農(nóng)業(yè)大學學報,2007(03):9-13.

[26]王立秋,趙永鋒,薛亞東,張祖新,鄭用璉,陳景堂.玉米銜接式單片段導入系群體的構(gòu)建和評價[J].作物學報,2007(04):663-668.

[27]張世煌,鄭用璉,謝傳曉,李新海,郝轉(zhuǎn)芳,張祖新,王振華,潘光堂,陳彥惠,李明順.對玉米DNA指紋分析中有關(guān)問題的探討[J].種子科技,2007(01):41-43.

[28]陶勇生,張祖新,程友林,李立家,鄭用璉.水稻BAC在玉米有絲分裂染色體上FISH雜交體系的構(gòu)建[J].中國生物化學與分子生物學報,2007(01):80-84.

[29]胡潔云,楊文鵬,張祖新,鄭用璉.玉米Opaque-2基因內(nèi)3個SSR位點的顯性等位變異及其對賴氨酸含量的影響[J].作物學報,2006(09):1265-1271.

[30]穆蕊,張祖新,張方東,鄭用璉.玉米CMS-S小孢子敗育過程中的細胞程序性死亡[J].作物學報,2006(05):666-670+791.

[31]張祖新,張紹鵬,鄭用璉.基于比較基因組學的玉米ESTs定位方法[J].遺傳,2006(03):339-344.

[32]張祖新,方明鏡,杜何為,鄧莉蓉,鄭用璉.基于PCR技術(shù)的玉米CMS材料胞質(zhì)類型的快速鑒定[J].作物學報,2005(10):1386-1388.

[33]張祖新,唐萬虎,鄭用璉.玉米S型細胞質(zhì)雄性不育與恢復花粉中基因表達差異分析[J].長江大學學報(自科版),2005(08):59-63+6.

[34]張祖新,唐萬虎,鄭用璉.玉米 S 型細胞質(zhì)雄性不育與恢復花粉中基因表達差異分析[J].長江大學學報(自科版)農(nóng)學卷,2005(03):59-63+11.

[35]唐萬虎,張祖新,鄒錫玲,陳旋,鄭用璉.玉米耐漬功能基因組分析及相關(guān)基因Sicyp51的鑒定與克隆[J].中國科學C輯:生命科學,2005(01):29-36.

[36]杜何為,張祖新,鄭用璉.玉米組織培養(yǎng)及農(nóng)桿菌遺傳轉(zhuǎn)化體系的研究[J].湖北農(nóng)業(yè)科學,2004(02):34-36.

[37]張祖新,張方東,鄭用璉.DNA芯片技術(shù)在植物功能基因組研究中的應用[J].生物技術(shù),2003(04):38-39.

[38]杜何為,張祖新,鄭用璉.玉米組織培養(yǎng)體系的研究[J].湖北農(nóng)業(yè)科學,2003(04):22-24+39.

[39]張祖新,姜華武,魏中一,鄭用璉.淹水脅迫下不同耐漬性玉米自交系根系中的酶學研究[J].湖北農(nóng)業(yè)科學,2003(03):25-27+24.

[40]張祖新,張方東,鄭用璉.功能基因組學及其研究方法[J].作物學報,2003(02):194-201.

[41]張祖新.RNA干涉原理及其應用[J].湖北農(nóng)學院學報,2002(06):560-565.

[42]張祖新,張方東,鄭用璉.玉米CMS分子生物學研究進展[J].遺傳,2002(05):601-606.

[43]曾學禮,張祖新.對湖北省20個玉米地方品種的數(shù)量性狀分析和聚類分析[J].湖北農(nóng)業(yè)科學,2001(05):35-38.

[44]姜華武,張祖新.淹水對玉米根系幾種酶活性的影響[J].湖北農(nóng)學院學報,1999(03):18-20.

[45]姜華武,張祖新.玉米種質(zhì)的耐澇性鑒定及耐澇性遺傳研究初報[J].湖北農(nóng)學院學報,1999(02):93-94.

[46]陳在新,張祖新.豐果草莓生物學性狀間的相關(guān)性研究[J].湖北農(nóng)學院學報,1999(01):23-25.

[47]姜華武,張祖新.玉米的厭氧代謝與耐澇性[J].湖北農(nóng)學院學報,1999(01):80-85.

[48]劉紀麟,鄭用璉,張祖新,盧洪,李建生,徐尚忠.三峽地區(qū)玉米地方品種雜種優(yōu)勢群的初探[J].作物雜志,1998(S1):6-12.

[49]張祖新,陳志紅,龔先玲.玉米雜交種遺傳改良的自交系的鑒定[J].湖北農(nóng)學院學報,1998(03):4-7.

[50]王榮堂,張祖新,陳柏寒.農(nóng)業(yè)氣象信息系統(tǒng)的開發(fā)與利用[J].中國農(nóng)業(yè)氣象,1998(01):44-46.

[51]張祖新,吳紅清.玉米合成群體中改良單交種的等位基因相對數(shù)目估測[J].湖北農(nóng)學院學報,1997(04):3-6.

[52]王榮堂,張祖新,陳柏寒.農(nóng)業(yè)氣象信息系統(tǒng)的開發(fā)與利用[J].湖北農(nóng)學院學報,1997(04):19-22.

[53]張祖新,魏中一,許先鳳,涂顯平.對湖北省4個玉米新合成群體的遺傳評價[J].湖北農(nóng)業(yè)科學,1997(04):20-22.

[54]張祖新,許先鳳,姜華武,魏中一.8個玉米綜合種的雙列雜交分析[J].作物品種資源,1997(03):14-16.

[55]張祖新,許先鳳,姜華武,魏中一.八個玉米綜合種的雙列雜交分析[J].湖北農(nóng)學院學報,1997(01):9-12.

[56]張祖新,鄭用璉,李建生,劉紀麟.玉米地方品種同工酶的遺傳多樣性及其與數(shù)量性狀的關(guān)系[J].湖北農(nóng)學院學報,1996(01):1-8.

[57]張祖新,鄭用璉,李建生,劉紀麟.玉米10份地方品種和4份外來群體同工酶位點的遺傳多樣性[J].華中農(nóng)業(yè)大學學報,1995(04):322-326.

[58]張祖新.玉米群體改良中幾個問題的討論[J].湖北農(nóng)學院學報,1995(03):60-64.

[59]張祖新,劉貴華.對學科建設管理機制的探討[J].黑龍江高教研究,1995(04):58-60.

[60]張祖新,鄭用璉,李建生,劉紀麟.三峽地區(qū)10個玉米地方品種的遺傳潛勢[J].華中農(nóng)業(yè)大學學報,1994(05):449-454.

[61]張祖新,劉紀麟.分子標記在作物遺傳育種中的應用[J].湖北農(nóng)學院學報,1993(03):228-234.

發(fā)表會議論文：   

[1]張祖新,賈海濤,李曼菲,楊曉紅,李威亞. 玉米穗粒數(shù)基因KNR6的功能與應用研究[C]. 第十九屆中國作物學會學術(shù)年會論文摘要集. 2020:49.

[2]Lei Liu,Yanfang Du,Xiaomeng Shen,Wei Sun,Manfei Li,Juan Huang,Yonglian Zheng,Jianbing Yan,張祖新. KRN4 Dominates Natural Variation of Kernel Row Number in Maize[C]. 第一屆全國玉米生物學學術(shù)研討會論文匯編 2015:31.

[3]丁冬,汪航,高友軍,鄒錫玲,張祖新,鄭用璉. 利用cDNA芯片技術(shù)和消減雜交技術(shù)研究玉米苗期鹽脅迫抗性相關(guān)基因及其分子機制[C]. 湖北省暨武漢市生物化學與分子生物學學會第八屆第十七次學術(shù)年會論文匯編. 2007:56-57.

[4]王毅,姚驥,張祖新,鄭用璉. 玉米QTL圖譜的整合和基于比較基因組學的QTL克隆策略探討[C]. 2004全國玉米種質(zhì)擴增、改良、創(chuàng)新與分子育種學術(shù)會議論文集. 2004:203-213.

[5]張祖新,唐萬虎,鄒錫玲,鄭用璉. 玉米根系對淹水脅迫的早期響應及耐漬相關(guān)基因分析[C]. 2004全國玉米種質(zhì)擴增、改良、創(chuàng)新與分子育種學術(shù)會議論文集. 2004:231-242.

[6]鄭用璉,張祖新,張方東. 植物功能基因組研究策略[C]. 2003年全國作物遺傳育種學術(shù)研討會論文集. 2003:506.