論文專著：

先后在國際性雜志上發表了18篇論文。

出版專著：

1. Biradar S, Nie X, Feng K, Weining S (2013) Preparation of High Molecular weight gDNA and Bacterial Artificial Chromosome (BAC) libraries. In “Cereal Genomics-Methods and Protocols”Methods in Molecular Biology (Springer series) Ed R J. Henry and A Furtado   Springer Science, USA 1099:41-63.

2. Biradar S, Den P and Weining S (2013) Plant WRKY gene family and its response to abiotic stress. In Molecular Approaches for Plant Abiotic Stress. Ed R.K.Gaur and Pradeep Sharma C Taylor & Francis CRC Press.

3. Liu, D., Du X. and Weining S (2011) Acremonium. In: MOLECULAR DETECTION OF HUMAN FUNGAL PATHOGENS Ed. Liu, D. Taylor & Francis CRC Press

4. Weining S and Liu D. (2009) Isolation of Nucleic Acids from Plants. In: Handbook of Nucleic Acid Purification. Ed. Liu, D. Taylor & Francis CRC Press.

5. Weining S and Liu D. (2021) Genetic manipulation and genome editing of Saccharomyces cerevisiae. In: Molecular Food Microbiology. Ed. Liu, D. Taylor & Francis CRC Press

　

發表英文論文：

[1] Genomic and Phenotypic Divergence in Wild Barley Driven by Microgeographic Adaptation（2020） Advanced Science （影響因子15.84） DOI: 10.1002/advs.202000709 通訊作者

[2] A large‐scale genomic association analysis identifies the candidate causal genes conferring stripe rust resistance under multiple field environments （2020）Plant Biotechnology Journal （影響因子8.2）DOI: 10.1111/pbi.13452

[3] GENOME‐WIDE IDENTIFICATION AND ANALYSIS OF THE CslF GENE FAMILY IN BARLEY (Hordeum vulgare L.) （2020） Journal of Microbiology, Biotechnology and Food Sciences（影響因子0.3）doi: 10.15414/jmbfs.2020.10.1.122-126 通訊作者

[4] The improved assembly of 7DL chromosome provides insight into the structure and evolution of bread wheat.（2019）Plant Biotechnology Journal （影響因子8.2）DOI: 10.1111/pbi.13240 通訊作者

[5] Hybrid sequencing reveals insight into heat sensing and signaling of bread wheat.（2019）The Plant Journal （影響因子6.141）DOI: 10.1111/tpj.14299

[6] Transcriptome and Proteome-Based Network Analysis Reveals a Model of Gene Activation in Wheat Resistance to Stripe Rust.（2019）International Journal of Molecular Sciences （影響因子4.556）20(5):1106 DOI: 10.3390/ijms2005110

[7] Transcriptional Dynamics of Grain Development in Barley (Hordeum vulgare L.).（2019）International Journal of Molecular Sciences （影響因子4.556） 20(962):1-16 通訊作者

[8] Frequent intra- and inter-species introgression shapes the landscape of genetic variation in bread wheat,（2019）Genome Biology （影響因子12.16）20(1) DOI: 10.1186/s13059-019-1744-x 通訊作者

[9] N6‐methyladenosine regulatory machinery in plants: composition, function and evolution.（2019）Plant Biotechnology Journal （影響因子8.2）17(7) DOI: 10.1111/pbi.13149 通訊作者

[10] Evolution and Identification of the WRKY Gene Family in Quinoa (Chenopodium quinoa).（2019）Genes （影響因子3.759）10(2):131 DOI: 10.3390/genes10020131 通訊作者

[11] Melatonin: A Small Molecule but Important for Salt Stress Tolerance in Plants.（2019）International Journal of Molecular Sciences （影響因子4.556）20(3):709 DOI: 10.3390/ijms20030709 通訊作者

[12] QTL mapping of plant height, spike length, peduncle length and number of grains per plant in barley (Hordeum vulgare l.) using ‘steptoe/morex’ dh population grown in northwest of China. (2018) Pakistan Journal of Botany （影響因子0.8）50(6):2205-2214 通訊作者

[13] Shifting the limits in wheat research and breeding using a fully annotated reference genome.（2018）Science (影響因子41.058) 361，6403, eaar7191 DOI: 10.1126/science.aar7191

[14] Genome-Wide Sequence and Expressional Analysis of Autophagy Gene Family in Bread Wheat (Triticum aestivum L.).（2018）Jounal of Plant Physiology （影響因子3.013）229 DOI: 10.1016/j.jplph.2018.06.012 通訊作者

[15] Whole-genome resequencing reveals world-wide ancestry and adaptive introgression events of domesticated cattle in East Asia.（2018）Nature Communications （影響因子12.121）9(1) DOI: 10.1038/s41467-018-04737-0

[16] Beta-Glucan: An Overview of its Properties, Health Benefits, Genetic Background and Practical Applications. （2018）Journal of Agriculture and Veterinary Sciences DOI: 10.21276/sjavs.2018.5.3.2 通訊作者

[17] Identification and characterisation of RNA editing sites in chloroplast transcripts of einkorn wheat (Triticum monococcum): RNA editing sites in einkorn wheat plastome.（2018）Annals of Applied Biology （影響因子2.037）172(2):197-207 DOI: 10.1111/aab.12412 通訊作者

[18] Comprehensive evaluating of wild and cultivated emmer wheat (Triticum turgidum L.) genotypes response to salt stress.（2018）Plant Growth Regulation（影響因子2.388）84(4) DOI: 10.1007/s10725-017-0337-5 通訊作者

[19] Genome-Wide Identification and Expression Analysis of the HD-Zip Gene Family in Wheat (Triticum aestivum L.). Genes （影響因子3.759）9(2):70 DOI: 10.3390/genes9020070 通訊作者

[20] Direct comparison of β-glucan content in wild and cultivated barley.（2018）International Journal of Food Properties（影響因子1.808）21(1):2218-2228 DOI: 10.1080/10942912.2018.1500486 通訊作者

[21] Conservation analysis of long non-coding RNAs in plants.（2017）Science China. Life sciences （影響因子4.611）61(2) DOI:10.1007/s11427-017-9174-9

[22] Kewei Feng, Xiaojun Nie, Licao Cui, Pingchuan Deng, Mengxing Wang, Weining Song. Genome-Wide Identification and Characterization of Salinity Stress-Responsive miRNAs in Wild Emmer Wheat (Triticum turgidum ssp. dicoccoides). Genes, 2017, 8, 156. (SCI收錄, 影響因子3.600)

[23] Licao Cui, Kewei Feng, Mengxing Wang, Meng Wang, Pingchuan Deng, Weining Song*, Xiaojun Nie*. Genome-Wide Identification, Phylogeny and Expression Analysis of AP2/ERF Transcription Factors Family in Brachypodium distachyon. BMC Genomics, 2016, 17(1):636. (SCI收錄, 影響因子3.867)

[24] Hong Yue, Meng Wang, Siyan Liu, Xianghong Du, Weining Song*, Xiaojun Nie*. Transcriptome-wide identification and expression profiles of the WRKY transcription factor family in Broomcorn millet (Panicum miliaceum L.). BMC Genomcis, 2016, 17:343. (SCI收錄, 影響因子3.867)

[25] Hong Yue, Le Wang, Hui Liu, Wenjie Yue, Xianghong Du, Weining Song*, Xiaojun Nie*. De novo Assembly and Characterization of the Transcriptome of Broomcorn Millet (Panicum miliaceum L.) for Gene Discovery and Marker Development. Frontiers in Plant Science, 2016, 7, 571. (SCI收錄, 影響因子4.495)

[26] Pingchuan Deng, Meng Wang, Kewei Feng, Licao Cui, Wei Tong, Weining Song*, Xiaojun Nie*. Genome-wide characterization of microsatellites in Triticeae species: abundance, distribution and evolution. Sci. Rep. 2016, 6, 32224.

[27] Meng Wang, Hong Yue, Kewei Feng, Pingchuan Deng, Weining Song*, Xiaojun Nie*. Genome-Wide Identification, Phylogeny and Expressional Profiles of Mitogen Activated Protein Kinase Kinase Kinase (MAPKKK) Gene Family in Bread Wheat (Triticum aestivum L.). BMC Genomics, 2016, 17: 668.

[28] Pingchuan Deng, Xiaoxin Bian, Hong Yue, Kewei Feng, Xianghong Du, Weining Song*, Xiaojun Nie*. Characterization of microRNAs and their targets in wild barley (Hordeum vulgare subsp. spontaneum) using deep sequencing. Genome, 2016, 5 , 59.

[29] Mengxing Wang, Licao Cui, Kewei Feng, Pingchuan Deng, Xianghong Du, Fanghao Wan, Weining Song*, Xiaojun Nie*. Comparative Analysis of Asteraceae Chloroplast Genomes: Structural Organization, RNA Editing and Evolution. Plant Molecular Biology Reporter, 2015, 5, 33.

[30] Pingchuan Deng, Le Wang, Licao Cui, Keiwei Feng, Fuyan Liu, Xianghong Du, Wei Tong, Xiaojun Nie, Wanquan Ji, Weining Song*. Global Identification of MicroRNAs and Their Targets in Barley under Salinity Stress. PLoS One. 2015, 10(9): e0137990.

[31] Pingchuan Deng#, Xiaojun Nie#, Le Wang, Licao Cui, Peixun Liu, Wei Tong, Siddanagouda S. Biradar, David Edwards, Paul Berkman, Hana ?imková, Jaroslav Dole?el, Mincheng Luo, Frank You, Jacqueline Batley, Delphine Fleury, Rudi Appels, Song Weining. Computational identification and comparative analysis of wheat miRNAs in group 7 chromosomes. Plant molecular biology Reporter, 2014, 32, 487-500. (SCI收錄, 影響因子2.304)

[32] Yunze Lu, Le Wang, Hong Yue, Mengxing Wang, Pingchuan Deng, David Edwards,  Weining Song*. Comparative analysis of Stowaway–like MITEs in wheat group 7 chromosomes: abundance, composition and evolution. Journal of Systematics and Evolution, 2014, 52(6): 743–749.

[33] Xiaojun Nie, Peixun Liu, Pingchuan Deng, Yunze Lu, Siddanagouda S. Biradar, Xiangong Du, Aiping Wu, Fanghao Wan, Weining Song*. Large scale identification of microsatellites for a major invasive weed, Ageratina adenophora using the Illumina sequencing technology. Weed research, 2014, 54, 134-139.

[34] Xiaojun Nie, Pingchuan Deng, Kewei Feng, Peixun Liu, Xianghong Du, Frank M You, Weining Song*. Comparative analysis of codon usage patterns in chloroplast genomes of the Asteraceae family. Plant Molecular Biology Reporter, 2014, 32, 828-840.

[35] Luo, M……. Weining Song et al. (2013) A 4-gigabase physical map unlocks the structure and evolution of the complex genome of Aegilops tauschii, the wheat D-genome progenitor. Proceedings of the National Academy of the Sciences of the United States of America 110:7940-7945

[36] Berkman, P, Visendi P, Lee H, Stiller J, Manoli S, Lorenc M, Lai K, Batley J, Fleury D, SimkováH, KubalákováM, Weining Song, Doležel J, Edwards D (2013) Dispersion and domestication shaped the genome of bread wheat. Plant Biotechnol Journal 11:564-571.

[37] Xiaojun Nie, Shuzuo Lv, Yingxin Zhang, Xiangong Du, Le Wang, Siddanagouda S. Biradar, Xiufang Tan, Fanghao Wan, Weining Song*. Complete chloroplast genome of a major invasive species, Crofton weed (Ageratina adenophora L.). PLoS ONE, 2012, 5, e36869.

[38] Xiaojun Nie, Bianli Li, Le Wang, Peixun Liu, Siddanagouda S. Biradar, Tao Li, Jaroslav Dolezel, David Edwards, Mingcheng Luo, Weining Song*. Development of chromosome-arm-specific microsatellite markers in Triticum aestivum (Poaceae) using NGS technology. American Journal of Botany, 2012, 99, e369–e371.

[39] Shuzuo Lv, Xiaojun Nie, Le Wang, Siddanagouda S. Biradar, Xiaoou Jia, Weining Song*. Identification and characterization of microRNAs from barley (Hordeum vulgare L.) by Solexa sequencing. International Journal of Molecular Science, 2012, 13, 2973–2984.

[40] Yuerong Zhang, Xiaojun Nie, Xiaoou Jia, Cunzhen Zhao, Siddanagouda S. Biradar B, Le Wang, Xianghong Du, Weining Song*. Analysis of codon usage patterns of the chloroplast genomes in the Poaceae family. Australia Journal of Botany, 2012, 60, 461–470.

[41] Chen, Y. H., Weining, S. and Daggard, G. (2003) Preparation of total RNA from a very small wheat embryo suitable for differential display. Annals of Applied Biology 143: 261-264 (通訊作者)

[42] Chen, Y. H., Weining, S. and Daggard, G. (2004) Anchor primer associated problems in differential display reverse transcription polymerase chain reaction. Analytical Biochemistry 329, 145-147 (通訊作者)

[43] Chen, G., Sagi, M., Weining, S., Krugman, T., Fahima, T., Korol, A. B. and Nevo, E. (2004) Wild barley eibi1 mutation identifies a gene essential for leaf water conservation. Planta 219, 684-693

[44] Jin Y., Weining, S., and Nevo, E. (2005) A MAPK gene from a Dead Sea fungus confers stress tolerance to lithium salt and freezing-thawing: Prospects for saline agriculture. Proceedings of the National Academy of Sciences 102, 18992-18997

[45] Hu, Y., Zhu, J., Liu, F., Zhang, Z., Chai Y., Song, W., (2008) Genetic Diversity among Chinese Landraces and Cultivars of Broomcorn Millet (Panicum miliaceum L.) Annals of Applied Biology 153，357—364 (通訊作者)

[46] Lei, C., Su, R., Bower, M., Edwards, C., Wang, C., Song, W.,S., Liu, L., Xie, M., Li, F., Liu, R., Zhang, Y., Zhang, C. and Chen, H. (2009) Multiple maternal origins of native modern and ancient horse populations in China. Animal Genetics, 40, 933—944

發表中文期刊論文：

[1]葛玲巧,Farhana Kumbhar,趙賢,王萌,王莎,宋衛寧,聶小軍.烏拉爾圖小麥葉綠體RNA編輯位點的預測與鑒定[J].分子植物育種,2017,15(07):2479-2488.

[2]邢光偉,王夢醒,馬小飛,趙賢,張婷,聶小軍,宋衛寧.小麥LBD基因家族的全基因組鑒定、表達特性及調控網絡分析[J].麥類作物學報,2017,37(07):855-863.

[3]劉慧,王夢醒,岳文杰,邢光偉,葛玲巧,聶小軍,宋衛寧.糜子葉綠體基因組密碼子使用偏性的分析[J].植物科學學報,2017,35(03):362-371.

[4]聶小軍,馮克偉,宋衛寧.雙語教學在研究型農業大學中的重要性及其對策研究[J].大學教育,2017(01):103-104.

[5]呂萌荔,聶小軍,宋衛寧.淺析大學生創新項目對創新思維培養的作用[J].中國林業教育,2016,34(03):7-9.

[6]劉思妍,馮克偉,卞建新,王萌,楊智凱,聶小軍,宋衛寧.野生二粒小麥葉綠體基因RNA編輯位點的預測、鑒定與分析[J].麥類作物學報,2015,35(12):1609-1616.

[7]呂萌荔,王夢醒,賈曉鷗,鄧平川,聶小軍,宋衛寧.紫莖澤蘭葉綠體基因RNA編輯位點的鑒定及分析[J].西北農業學報,2015,24(02):127-133.

[8]王夢醒,詹豪爽,呂萌荔,劉思妍,宋衛寧.粗山羊草葉綠體基因RNA編輯位點的鑒定與分析[J].麥類作物學報,2014,34(10):1341-1349.

[9]劉萌娟,李鳴雷,郭小華,王靜雅,宋衛寧.陜西豌豆種質資源形態性狀遺傳多樣性分析[J].西北農林科技大學學報(自然科學版),2014,42(10):70-80.

[10]牛善策,石文清,劉培勛,鄧平川,張月榮,李變麗,呂樹作,聶小軍,王樂,宋衛寧.中東大麥群體農藝性狀多樣性與生態地理因素的關聯分析[J].西北農業學報,2012,21(04):42-46+59.

[11]石文清,鄧平川,李變麗,牛善策,聶小軍,王樂,Abdul·Wahid·Baloch,宋衛寧.二穗短柄草葉綠體RNA編輯位點的預測及其鑒定[J].麥類作物學報,2012,32(01):28-35.

[12]張迎新,賈曉鷗,張月榮,杜向紅,萬方浩,宋衛寧.紫莖澤蘭高分子量核DNA制備方法的研究[J].西北植物學報,2011,31(12):2551-2557.

[13]程睿,Kansaye Aly,杜向紅,呂樹作,宋衛寧.不同麥類種質資源苗期冠腐病抗性鑒定與分析[J].西北農業學報,2011,20(09):31-34+88.

[14]譚秀芳,杜向紅,牛善策,聶小軍,張迎新,萬方浩,宋衛寧.基于葉綠體序列分析紫莖澤蘭在菊科的系統發育[J].西北農業學報,2011,20(04):138-143.

[15]解松峰,歐行奇,張百忍,聶小軍,杜向紅,張寶軍,宋衛寧.大麥引進種質資源表型的多樣性與模糊聚類分析[J].干旱地區農業研究,2010,28(05):5-14.

[16]李康,聶小軍,方桂英,王樂,岳華,佘奎軍,宋衛寧.普通小麥及其近緣種NCED基因的克隆及表達分析[J].西北農業學報,2010,19(06):55-59.

[17]方桂英,杜向紅,張保軍,程睿,李康,岳華,王長發,呂樹作,宋衛寧.約旦野生大麥種質資源形態與產量性狀分析[J].西北農業學報,2010,19(06):78-83.

[18]高永鋼,杜向紅,金廣慧,程睿,佘奎軍,聶小軍,解松峰,吉萬全,宋衛寧.不同生境下以色列野生大麥群體與栽培大麥農藝性狀的遺傳多樣性分析[J].西北農業學報,2010,19(05):57-64.

[19]岳華,杜向紅,呂樹作,方桂英,李康,王樂,聶小軍,宋衛寧.轉釀酒酵母HOG1基因擬南芥植株的獲得與檢測[J].西北農業學報,2010,19(04):86-90.

[20]解松峰,Kansaye Aly,杜向紅,聶小軍,方桂英,楊建濤,李康,張保軍,宋衛寧.30份引進大麥品種(系)苗期耐鹽性綜合分析[J].草業科學,2010,27(04):127-133.

[21]楊建濤,李康,杜向紅,宋衛寧.以色列二穗短柄草遺傳多樣性分析[J].西北植物學報,2010,30(04):683-689.

[22]金廣慧,杜向紅,譚秀芳,高永鋼,宋衛寧.硬粒小麥和野生二粒小麥高分子量谷蛋白亞基的遺傳多樣性[J].麥類作物學報,2010,30(02):227-232.

[23]佘奎軍,王士強,胡銀崗,宋衛寧.野生大麥與栽培大麥醇溶蛋白遺傳多樣性比較[J].西北植物學報,2009,29(01):61-68.

發表會議論文：

[1]聶小軍,宋衛寧,姜雨. 基于重測序的小麥遺傳多樣性與遺傳變異研究[C]. 科技創新與扶貧攻堅——陜西省農作物學會第二屆會員代表大會暨2019年學術年會摘要集. 2019:18-19.

[2]馮克偉,聶小軍,宋衛寧,萬方浩. 基于二代和三代測序技術研究紫莖澤蘭轉錄組的復雜性[C]. 第五屆全國入侵生物學大會——入侵生物與生態安全會議摘要. 2018:51.

[3]曹文進,邢莉萍,熊琴,李英俊,陳金慧,孫亞民,黃麟,梁建國,張芳,聶小軍,曾慶東,曹愛忠,張宏,宋衛寧,王中華,韓德俊,吉萬全,康振生,施季森,徐海濱. 基于BAC文庫的普通小麥中國春2DS基因組組裝[C]. 江蘇省遺傳學會2017年學術研討會——“技術創新與遺傳學發展”論文摘要集. 2017:15.

[4]崔立操,馮克偉,聶小軍,宋衛寧. 大麥MAPK cascade基因家族的全基因組鑒定、進化與共表達網絡分析[C]. 第八屆全國小麥基因組學及分子育種大會摘要集. 2017:115.

[5]馮克偉,崔立操,聶小軍,宋衛寧. 大麥基因表達水平與基因家族擴張間的效應分析[C]. 第八屆全國小麥基因組學及分子育種大會摘要集. 2017:251.

[6]聶小軍,崔立操,馮克偉,宋衛寧. 65個大麥葉綠體基因組的測序及系統分化分析[C]. 第八屆全國小麥基因組學及分子育種大會摘要集. 2017:252.

[7]王樂,聶小軍,童維,Simkova Hana,Safar Jan,Dolezel Jaroslav,Rudi Apples,Mingcheng Luo,宋衛寧. 小麥7DL染色體參考序列/人工分子(pseudomolecule)組裝[C]. 第六屆全國小麥基因組學及分子育種大會論文集. 2015:29-30.

[8]馬猛,李趙杰,宋衛寧,趙惠賢. 小麥穗部病毒誘導基因沉默體系的建立及籽粒大小相關基因TaCYP78A3的功能研究[C]. 第六屆全國小麥基因組學及分子育種大會論文集. 2015:35-36.

[9]童維,鄧平川,崔立操,馮克偉,聶小軍,宋衛寧. 整合轉錄組、蛋白質組和microRNA數據解析小麥穗發育過程[C]. 第六屆全國小麥基因組學及分子育種大會論文集. 馮克偉,鄧平川,呂萌荔,王萌,卞建新,宋衛寧,聶小軍. 野生二粒小麥鹽脅迫相關miRNA的鑒定與表達特性分析[C]. 第六屆全國小麥基因組學及分子育種大會論文集.中國作物學會:中國作物學會,2015:112.

[11]劉思妍,馮克偉,卞建新,王萌,楊智凱,聶小軍,宋衛寧. 野生二粒小麥葉綠體基因RNA編輯位點的預測與鑒定分析[C]. 第六屆全國小麥基因組學及分子育種大會論文集. 2015:113.

[12]馬猛,李趙杰,宋衛寧,趙惠賢. 小麥籽粒大小相關基因TaCYP78A5的功能研究[C]. 第六屆全國小麥基因組學及分子育種大會論文集. 2015:125.

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