論文專著：

在BMC Bioinformatics, BMC Genomics,等SCI源刊物發表研究論文20篇，參與編寫專著2部。

出版專著：

1、《生物信息學》，科學出版社，2007年，主編。 

發表部分英文論文：

1. Hongxia Pang,…S.H.Tao, Statistical Distributions of Optimal Global Alignment Scores of Random Protein Sequences. BMC Bioinformatics 6:257 (15 October 2005)（SCI, IF =5.423）(通訊作者)

2. Jingfeng Chen,…, S.H. Tao. significant positive correlation between the recombination rate and GC content in the human pseudoautosomal region Genome 2006 Volume 49, Number 5, May 2006: 413-419（SCI, IF=2.1）(通訊作者)

3. Jingjing Li, …, S.H. Tao. A New Method for RAPD Primers Selection Based on Primer Bias in Nucleotide Sequence Data. J. of biotechnology 126(2006):415 -423 （SCI, IF=2.687）(通訊作者)

4. Li GL, Tao SH, Wang XJ. Sequence and epitope analysis of surface proteins of avian influenza H5N1 viruses from Asian patients. Chinese Science Bulletin 2006, 51 (20): 2472-2481（SCI, IF =0.783）

5. Li Mingkun,…, Shiheng Tao. Evolution of the Isochore Structure in the Scale of Chromosome: Insight from the Mutation Bias and Fixation Bias. J. of Evolutionary Biology. 2008 Jan;21(1):173-182. Epub 2007 Nov 12. （SCI, IF=3.92）(通訊作者)

6. Gong XD,…, Tao SH. Comparative Analysis of Essential Genes and Nonessential Genes in Escherichia coli K12. Mol Genet Genomics. 2007 Oct 18; Mol Genet Genomics (2008) 279: 87-94 :（SCI, IF=2.978）(通訊作者)

7. Yanhui Fan, … Shiheng Tao Patterns of Insertion and Deletion in Mammalian Genomes Current Genomics, 2007, 8, 370-378 （SCI, IF=0.782）(通訊作者)

8. Yanhui Fan, … Shiheng Tao The rates and patterns of insertions, deletions and substitutions in mouse and rat inferred from introns Chinese Science Bulletin 2008， 53 (18) （SCI, IF =0.77）(通訊作者)

9. Xia Shen, …Shiheng Tao, the correlations of the function and positional distribution of the cis- elements CArG around the TSS in the genes of the Mus musculus Genome, 2009 52：217-221（SCI, IF =1.76）(通訊作者)

10. Qi Shi, …Shiheng Tao, Chimpanzee and Human Intron Comparison Reveals Functional Constraints and Complex Evolution Genetica 2009 （SCI, IF =1.7）(in press) (通訊作者)

11. Wu WW, Huang XT, Cheng J, Li ZG, de Folter S, Huang ZR, Jiang XQ, Pang HX and Tao SH*. 2011. Conservation and evolution in and among SRF-and MEF2-type MADS domains and their binding sites. Molecular Biology and Evolution, 28: 501-511. (SCI, IF="9.872)

12. Jiang XQ, Xu Z, Li J, Shi YY, Wu WW and Tao SH*. 2011. The influence of deleterious mutations on adaptation in a sexual population. PLoS one, 6:e27757. (SCI, IF="4.411)"

13. Li L, Guo Y, Wu WW, Shi YY, Cheng J and Tao SH*. 2012. A comparison and evaluation of five biclustering algorithms by quantifying goodness of biclusters for gene expression data. BioData Mining, 5(1): 1-10. (SCI, IF="2.624))

14. Cheng J, Wu WW, Zhang YW, Li XC, Jiang XQ, Wei GH and Tao SH*. 2013. A new computational strategy for predicting essential genes. BMC Genomics, 14:910. (SCI, IF="4.397)

15. Jiang XQ, Hu SJ, Xu Q, Chang YJ and Tao SH*. 2013. Relative effects of segregation and recombination on the evolution of sex in finite diploid populations. Heredity, 111(6):505-512. (SCI, IF="4.110)"

16. Mao YH, Wang WT, Cheng N, Li Q and Tao SH*. 2013. Universally increased mRNA stability downstream of the translation initiation site in eukaryotes and prokaryotes. Gene, 517:230-235. (SCI, IF="2.196)

17. Mao YH, Li Q, Wang WT, Liang PQ and Tao SH*. 2013. Number variation of high stability regions is correlated with gene functions. Genome Biology Evolution, 5:484-493. (SCI, IF="4.759)

18.Mao YH, Liu HL, Liu YL and Tao SH*. 2014. Deciphering the rules by which dynamics of mRNA secondary structure affect translation efficiency in Saccharomyces cerevisiae. Nucleic Acids Research, 42:4813-4822. (SCI, IF="8.808

19.Chang YJ, Hua Y, Jiang XQ and Tao SH*. 2015. Influences of dominance and evolution of sex in finite diploid populations. PloS one, 10(5): e0128459. (SCI, IF="3.534)

20. Meng XW, Wang C, Rahman SR, Wang YX, Wang AL and Tao SH*. 2015. Genome-wide identification and evolution of HECT genes in soybean. International Journal of Molecular Sciences, 16(4):8517-8535. (SCI, IF="2.862)

發表中文期刊論文：

[1]韓崗,馬婧,陶士珩,張羽,楊健.厚壁菌門細菌及其祖先蛋白的氨基酸偏好性研究[J].安徽農業科學,2011,39(30):18408-18410.

[2]馬婧,孫超,陶士珩,韓崗,楊健.基因組偏好影響細菌直系同源蛋白質組成[J].安徽農業科學,2011,39(26):15848-15854.

[3]王旺田,張金文,王蒂,張俊蓮,司懷軍,陶士珩.馬鈴薯塊莖糖基轉移酶基因的克隆及其RNAi載體的構建[J].作物學報,2011,37(11):1926-1934.

[4]范巍,陳金鋒,陶士珩.基因分型錯誤對病例對照方法估計疾病外顯率可靠性的影響[J].中國衛生統計,2010,27(06):567-571+576.

[5]王旺田,張金文,王蒂,陶士珩,季彥林,吳兵.光質與馬鈴薯塊莖細胞信號分子和糖苷生物堿積累的關系[J].作物學報,2010,36(04):629-635.

[6]杜江峰,武永軍,方曉峰,曹君霞,趙亮,陶士珩.生物信息方法預測高粱miRNA及其靶基因[J].科學通報,2010,55(07):553-561.

[7]劉桂玲,陶士珩,朱珊娜,李晨.葡萄病害診斷BP網絡模型關鍵問題研究[J].農機化研究,2010,32(02):13-16.

[8]張銀霞,曹鉆,袁志發,陶士珩.相鄰位點堿基突變的熵性質[J].浙江大學學報(農業與生命科學版),2010,36(01):43-48.

[9]杜江峰,武永軍,張銀霞,吳磊,陶士珩.信息熵方法大批量分析成熟體及前體miRNA序列的重要位點[J].中國科學(C輯:生命科學),2009,39(04):420-428.

[10]徐琪,吳信生,張學余,包文斌,陳國宏,侯慶文,陶士珩.狼山雞核型參數與生產性能的關系研究[J].中國家禽,2008,30(24):33-35.

[11]范彥輝,陶士珩.用Perl實現在Windows下本地化運行BLAST[J].生物信息學,2008(04):178-179.

[12]范彥輝,師奇,陳金鋒,王文娟,龐紅俠,唐教偉,陶士珩.大鼠與小鼠內含子中插入、缺失與替換的速度與模式[J].科學通報,2008(16):1916-1922.

[13]張子龍,陶士珩,李加納.甘藍型黃籽油菜與黑籽油菜苗期生理特性的比較研究[J].作物學報,2007(05):837-842.

[14]裴國亮,李京敬,王長發,陶士珩.冷暖型小麥基因差異的最佳RAPD反應體系研究[J].安徽農業科學,2006(13):2993-2995.

[15]李軍,王立祥,邵明安,陶士珩.寧南旱地作物降水生產潛力及其適度開發研究[J].水土保持學報,2001(S2):125-128.

[16]陶士珩,儲建華,劉曉明,張榮梅,張鎮,羅澤偉.應用混合群體的連鎖不平衡信息實現基因定位的解析率分析[J].科學通報,2001(16):1356-1358.

[17]陶士珩,劉曉明,儲建華,張榮梅,杜麗萍,羅澤偉.混合群體連鎖不平衡的衰減速率與基因定位[J].科學通報,2000(21):2274-2280.

[18]張榮梅,杜麗萍,彭志海,儲建華,劉曉明,陶士珩,羅澤偉.多結節性甲狀腺腫的分子遺傳學研究進展[J].中華醫學遺傳學雜志,2000(05):58-60.

[19]陶士珩,張榮梅,儲建華,劉曉明,杜麗萍,齊慶遠,羅澤偉.混合群體連鎖不平衡的群體遺傳學模型[J].科學通報,2000(19):2041-2047.

[20]錢允祺,陶士珩,王立祥,廖允誠.土壤濕度的統計特征及應用分析[J].中國農業氣象,1999(01):3-5.

[21]錢允祺,陶士珩.黃土高原降雨雨滴最終速度的分布律[J].西北農業大學學報,1998(05):3-5.

[22]陶士珩,王立祥,胡希遠,杜世平.土壤含水率測定的誤差分析及控制[J].干旱地區農業研究,1997(02):87-91.

[23]胡希遠,陶士珩,王立祥.半干旱偏旱區糜子溝壟徑流栽培研究初報[J].干旱地區農業研究,1997(01):47-52.

[24]陶士珩,王立祥,胡希遠.西北黃土高原水平梯田冬小麥的水分供應狀況分析[J].中國農業氣象,1996(03):7-9+13.

[25]蔣駿,許秀娟,陶士珩.寧南半干旱—半干旱偏旱區農業氣候特征分析[J].干旱地區農業研究,1996(02):88-94.

[26]陶士珩,胡希遠,王俊鵬,杜世平.寧南山區水平梯田的水分供應訂正函數[J].干旱地區農業研究,1995(04):33-39.

發表會議論文：

[1]杜江峰,方曉峰,陶士珩,武永軍. 生物信息法預測高粱miRNA及其靶基因[C]. 中國植物生理學會環境生理與營養生理專業委員會.第六屆中國植物逆境生理學與分子生物學學術研討會論文摘要匯編.中國植物生理學會環境生理與營養生理專業委員會:中國植物生理學會,2010:50.